Helicobacter pylori str. UM246

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM246 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical conditions found in the gastric environment of its host. As a host-associated microbe, H. pylori str. UM246 is adapted to the unique physiological conditions present within the stomach, which may influence its metabolic processes and survival strategies. The microaerophilic nature of H. pylori indicates that it requires specific oxygen levels for optimal growth, which are lower than those found in the atmosphere. This adaptation allows it to colonize the gastric mucosa where oxygen levels are reduced, providing an advantageous niche that may contribute to its persistence in the host. The traits of H. pylori str. UM246 highlight its specialized adaptations to a host-associated lifestyle, suggesting that its interactions within the gastric environment may be complex and finely tuned. Understanding the physiological traits of this strain can provide insights into its potential roles in the gastric microbiome and its interactions with other microbial communities, which may have implications for gastrointestinal health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM246

Accession NumberLFKI00000000.1

Gene Summary

Adenine Count

503521 bp

Thymine Count

504649 bp

Guanine Count

317751 bp

Cytosine Count

317121 bp

Genome Length

1643106 bp

Protein-coding Genes

1452 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative dna helicase, putative dna repair proteinACM27_00320Not Available+74724 - 7590245599.6
Dna primaseACM27_00325Q9ZN49+75914 - 7747360588.4
Hypothetical proteinACM27_00330Not Available+77470 - 7914364887.2
AttrNot AvailableNot Available+80585 - 80599Not Available
Jhp1044 mosaic, putative crystallin beta/gamma motif-containing proteinACM27_04235Not Available+883416 - 88377213659.4
hypothetical proteinACM27_04240Not Available+883768 - 8839657642.01
Putative tail fiberACM27_04245Not Available+883984 - 88453220996.4
hypothetical proteinACM27_04250Not Available+884529 - 88492414979.4
Hypothetical proteinACM27_04255Not Available+884924 - 88532515544.7
Hypothetical proteinACM27_04260Not Available+885322 - 88590922422.4

Displaying genes 11 – 20 of 1528 in total

Pathways

26 pathways

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030222-methyl-cis-aconitateC7H5O6Chemical structure of 2-methyl-cis-aconitateNot available
Average185.113Da
Monoisotopic185.0102586Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003091GDP-4-dehydro-alpha-D-rhamnoseC16H21N5O15P2Chemical structure of GDP-4-dehydro-alpha-D-rhamnoseNot available
Average585.313Da
Monoisotopic585.052036152Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da

Displaying 21–30 of 91 metabolites