Helicobacter pylori str. UM246

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM246 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical conditions found in the gastric environment of its host. As a host-associated microbe, H. pylori str. UM246 is adapted to the unique physiological conditions present within the stomach, which may influence its metabolic processes and survival strategies. The microaerophilic nature of H. pylori indicates that it requires specific oxygen levels for optimal growth, which are lower than those found in the atmosphere. This adaptation allows it to colonize the gastric mucosa where oxygen levels are reduced, providing an advantageous niche that may contribute to its persistence in the host. The traits of H. pylori str. UM246 highlight its specialized adaptations to a host-associated lifestyle, suggesting that its interactions within the gastric environment may be complex and finely tuned. Understanding the physiological traits of this strain can provide insights into its potential roles in the gastric microbiome and its interactions with other microbial communities, which may have implications for gastrointestinal health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM246

Accession NumberLFKI00000000.1

Gene Summary

Adenine Count

503521 bp

Thymine Count

504649 bp

Guanine Count

317751 bp

Cytosine Count

317121 bp

Genome Length

1643106 bp

Protein-coding Genes

1452 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinACM27_00290Not Available+71370 - 716369677.43
AttlNot AvailableNot Available+71388 - 71402Not Available
Putative phage integraseACM27_00295Not Available+71636 - 7275743239.0
Trna-ser;Not AvailableNot Available+72579 - 72666Not Available
Trna-ile;Not AvailableNot Available+72732 - 72808Not Available
Hypothetical proteinACM27_00300Not Available+72754 - 729879041.92
Trna-ala;Not AvailableNot Available+72824 - 72899Not Available
Hypothetical proteinACM27_00305Not Available+72989 - 7329711923.5
Putative phage replication proteinACM27_00310Not Available+73294 - 7425637690.6
Dna helicaseACM27_00315Not Available+74447 - 7471310599.3

Displaying genes 1 – 10 of 1528 in total

Pathways

26 pathways

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00019783-(4-hydroxyphenyl)pyruvateC9H7O4Chemical structure of 3-(4-hydroxyphenyl)pyruvateNot available
Average179.1495Da
Monoisotopic179.034433712Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 11–20 of 91 metabolites