Helicobacter pylori str. UM246

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM246 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical conditions found in the gastric environment of its host. As a host-associated microbe, H. pylori str. UM246 is adapted to the unique physiological conditions present within the stomach, which may influence its metabolic processes and survival strategies. The microaerophilic nature of H. pylori indicates that it requires specific oxygen levels for optimal growth, which are lower than those found in the atmosphere. This adaptation allows it to colonize the gastric mucosa where oxygen levels are reduced, providing an advantageous niche that may contribute to its persistence in the host. The traits of H. pylori str. UM246 highlight its specialized adaptations to a host-associated lifestyle, suggesting that its interactions within the gastric environment may be complex and finely tuned. Understanding the physiological traits of this strain can provide insights into its potential roles in the gastric microbiome and its interactions with other microbial communities, which may have implications for gastrointestinal health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM246

Accession NumberLFKI00000000.1

Gene Summary

Adenine Count

503521 bp

Thymine Count

504649 bp

Guanine Count

317751 bp

Cytosine Count

317121 bp

Genome Length

1643106 bp

Protein-coding Genes

1452 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinACM27_04320Not Available+893879 - 89442421020.2
Hypothetical proteinACM27_04325Not Available+894426 - 89522029626.4
Hypothetical proteinACM27_04330Not Available+895220 - 89579221394.3
Hypothetical proteinACM27_04335Not Available+895792 - 89611212494.4
Phage structure proteinACM27_04340I7H0I4+896285 - 89714532321.3
Hypothetical proteinACM27_04345Not Available+897145 - 89792429651.5
5s ribosomal rnaNot AvailableNot Available+104 - 221Not Available
siderophore-mediated iron transporterACM27_00005Not Available-1 - 28010608.9
hypothetical proteinACM27_00010Not Available-264 - 114533031.5
flagellar motor switch proteinACM27_00015Q44903-1142 - 151313972.8

Displaying genes 31 – 40 of 1528 in total

Pathways

26 pathways

Metabolites

91 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 91 metabolites