Helicobacter pylori str. UM163

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM163 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives at an optimal temperature of 37.0°C, indicating its adaptation to the human body, which serves as its primary habitat. As a host-associated microbe, H. pylori UM163 is intimately linked to the gastric environment, where it may influence various physiological processes. The microaerophilic nature of this strain suggests that it requires reduced oxygen levels for growth, which aligns with its gastric niche, where oxygen concentrations are lower than in the external environment. This adaptation could be crucial for its survival and function within the host's stomach, allowing it to evade the immune response while colonizing the mucosal lining. Understanding the specific traits of H. pylori UM163 provides insights into its ecological role in the human gastrointestinal tract. Its ability to thrive in a microaerophilic environment highlights the unique adaptations that bacteria can develop to exploit specific niches within host organisms. Further exploration of its interactions with the host and the implications for gastric health could reveal important aspects of microbial ecology and human health.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM163

Accession NumberLFJR00000000.1

Gene Summary

Adenine Count

510168 bp

Thymine Count

508811 bp

Guanine Count

318516 bp

Cytosine Count

318824 bp

Genome Length

1656397 bp

Protein-coding Genes

1487 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+39 - 156Not Available
chemotaxis protein cheyAK968_00005O06978-181 - 85225466.6
metallophosphoesteraseAK968_00010O25685-1202 - 231442167.7
acetyl-coa synthetaseAK968_00015Q1CUA3+2515 - 450375110.6
ribosome maturation protein rimpAK968_00020Q9ZM44-4611 - 505116641.2
ribosome-binding factor aAK968_00025B2USN5-5044 - 537912551.2
translation initiation factor if-2AK968_00030P55972-5379 - 8231106026.0
hypothetical proteinAK968_00035Not Available-8228 - 84558663.81
serine kinaseAK968_00040O25690-8469 - 935032654.0
hypothetical proteinAK968_00045Not Available-9404 - 987717730.4

Displaying genes 1 – 10 of 1529 in total

Pathways

26 pathways

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 92 metabolites