Helicobacter pylori str. UM152

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM152 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain is optimally adapted to a temperature of 37.0°C, reflecting its association with host environments, specifically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori is known for its ability to thrive in acidic conditions, which is a common characteristic of its habitat within the stomach. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its niche in the gastric environment where oxygen concentrations are lower than in the atmosphere. This adaptation may confer advantages in colonization and survival within the host's stomach, as well as in evading the host's immune responses. The isolation of strain UM152 contributes to the understanding of H. pylori's genetic and phenotypic diversity. Further studies could elucidate the strain's specific metabolic pathways and interactions with the host, potentially uncovering unique adaptations that facilitate its persistence in the gastric environment. The ecological role of H. pylori in the human microbiome may offer insights into its complex relationship with host health and disease, underscoring the importance of strain-level investigations in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM152

Accession NumberLFIS00000000.1

Gene Summary

Adenine Count

493454 bp

Thymine Count

502537 bp

Guanine Count

318272 bp

Cytosine Count

319072 bp

Genome Length

1633599 bp

Protein-coding Genes

1466 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+147 - 264Not Available
caldesmonAEY53_00015Not Available+1155 - 245650522.2
atpaseAEY53_00020Not Available+2499 - 5084100349.0
methionyl-trna formyltransferaseAEY53_00025P56461+5099 - 601033614.6
biotin--protein ligaseAEY53_00030Not Available+6007 - 664523912.0
sporulation initiation inhibitor sojAEY53_00035P37522+6651 - 744229043.5
chromosome partitioning protein parbAEY53_00040O25758+7445 - 833233953.4
atp f0f1 synthase subunit b'AEY53_00045Not Available+8470 - 887715641.0
atp f0f1 synthase subunit bAEY53_00050Q1CSD1+8881 - 939619827.7
atp f0f1 synthase subunit deltaAEY53_00055Not Available+9397 - 993920144.9

Displaying genes 1 – 10 of 1509 in total

Pathways

26 pathways

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004722carboxyspermidineC8H21N3O2Chemical structure of carboxyspermidineNot available
Average191.274Da
Monoisotopic191.1622798Da
BASm0004925UDP-N-acetyl-alpha-D-muramateC20H28N3O19P2Chemical structure of UDP-N-acetyl-alpha-D-muramateNot available
Average676.395Da
Monoisotopic676.080870429Da
BASm0005091(4S)-4-hydroxy-2-oxoglutarateC5H4O6Chemical structure of (4S)-4-hydroxy-2-oxoglutarateNot available
Average160.082Da
Monoisotopic160.001885009Da
BASm0005278GDP-4-dehydro-3,6-dideoxy-alpha-D-mannoseC16H21N5O14P2Chemical structure of GDP-4-dehydro-3,6-dideoxy-alpha-D-mannoseNot available
Average569.314Da
Monoisotopic569.0571215Da
BASm0005279GDP-beta-L-colitoseC16H23N5O14P2Chemical structure of GDP-beta-L-colitoseNot available
Average571.33Da
Monoisotopic571.0727716Da
BASm00060353-[(1-carboxyvinyl)-oxy]benzoateC10H6O5Chemical structure of 3-[(1-carboxyvinyl)-oxy]benzoateNot available
Average206.154Da
Monoisotopic206.0226205Da
BASm0007001UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateC28H39N5O23P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateNot available
Average875.582Da
Monoisotopic875.1533009Da
BASm0007003UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateC35H51N7O26P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateNot available
Average1047.7583Da
Monoisotopic1047.235898Da
BASm0007367(6S)-5,6,7,8-tetrahydropteroateC14H15N6O3Chemical structure of (6S)-5,6,7,8-tetrahydropteroateNot available
Average315.314Da
Monoisotopic315.1211119Da
BASm00074603-deoxy-alpha-D-manno-2-octulosonate-8-phosphateC8H12O11PChemical structure of 3-deoxy-alpha-D-manno-2-octulosonate-8-phosphateNot available
Average315.148Da
Monoisotopic315.0133689Da

Displaying 71–80 of 94 metabolites