Helicobacter pylori str. UM152

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM152 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain is optimally adapted to a temperature of 37.0°C, reflecting its association with host environments, specifically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori is known for its ability to thrive in acidic conditions, which is a common characteristic of its habitat within the stomach. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its niche in the gastric environment where oxygen concentrations are lower than in the atmosphere. This adaptation may confer advantages in colonization and survival within the host's stomach, as well as in evading the host's immune responses. The isolation of strain UM152 contributes to the understanding of H. pylori's genetic and phenotypic diversity. Further studies could elucidate the strain's specific metabolic pathways and interactions with the host, potentially uncovering unique adaptations that facilitate its persistence in the gastric environment. The ecological role of H. pylori in the human microbiome may offer insights into its complex relationship with host health and disease, underscoring the importance of strain-level investigations in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM152

Accession NumberLFIS00000000.1

Gene Summary

Adenine Count

493454 bp

Thymine Count

502537 bp

Guanine Count

318272 bp

Cytosine Count

319072 bp

Genome Length

1633599 bp

Protein-coding Genes

1466 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+147 - 264Not Available
caldesmonAEY53_00015Not Available+1155 - 245650522.2
atpaseAEY53_00020Not Available+2499 - 5084100349.0
methionyl-trna formyltransferaseAEY53_00025P56461+5099 - 601033614.6
biotin--protein ligaseAEY53_00030Not Available+6007 - 664523912.0
sporulation initiation inhibitor sojAEY53_00035P37522+6651 - 744229043.5
chromosome partitioning protein parbAEY53_00040O25758+7445 - 833233953.4
atp f0f1 synthase subunit b'AEY53_00045Not Available+8470 - 887715641.0
atp f0f1 synthase subunit bAEY53_00050Q1CSD1+8881 - 939619827.7
atp f0f1 synthase subunit deltaAEY53_00055Not Available+9397 - 993920144.9

Displaying genes 1 – 10 of 1509 in total

Pathways

26 pathways

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030222-methyl-cis-aconitateC7H5O6Chemical structure of 2-methyl-cis-aconitateNot available
Average185.113Da
Monoisotopic185.0102586Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003091GDP-4-dehydro-alpha-D-rhamnoseC16H21N5O15P2Chemical structure of GDP-4-dehydro-alpha-D-rhamnoseNot available
Average585.313Da
Monoisotopic585.052036152Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da

Displaying 21–30 of 94 metabolites