Helicobacter pylori str. UM152

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM152 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain is optimally adapted to a temperature of 37.0°C, reflecting its association with host environments, specifically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori is known for its ability to thrive in acidic conditions, which is a common characteristic of its habitat within the stomach. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its niche in the gastric environment where oxygen concentrations are lower than in the atmosphere. This adaptation may confer advantages in colonization and survival within the host's stomach, as well as in evading the host's immune responses. The isolation of strain UM152 contributes to the understanding of H. pylori's genetic and phenotypic diversity. Further studies could elucidate the strain's specific metabolic pathways and interactions with the host, potentially uncovering unique adaptations that facilitate its persistence in the gastric environment. The ecological role of H. pylori in the human microbiome may offer insights into its complex relationship with host health and disease, underscoring the importance of strain-level investigations in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM152

Accession NumberLFIS00000000.1

Gene Summary

Adenine Count

493454 bp

Thymine Count

502537 bp

Guanine Count

318272 bp

Cytosine Count

319072 bp

Genome Length

1633599 bp

Protein-coding Genes

1466 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
excinuclease abc subunit bAEY53_00160Q1CSF2+29903 - 3187975966.7
adenylosuccinate lyaseAEY53_00170P56468-32788 - 3411049956.5
pyruvate ferredoxin oxidoreductaseAEY53_00175Q57714-34219 - 3516334941.9
2-ketoisovalerate ferredoxin oxidoreductaseAEY53_00180O05651-35176 - 3639944686.2
pyruvate ferredoxin oxidoreductaseAEY53_00185Q57716-36409 - 3680115108.8
pyruvate ferredoxin oxidoreductaseAEY53_00190O05650-36817 - 3737721038.8
membrane proteinAEY53_00195Not Available+37668 - 3833924899.0
hypothetical proteinAEY53_00200Not Available-38346 - 3965351088.8
lipopolysaccharide biosynthesis proteinAEY53_00205Not Available+39843 - 4103946570.8
alcohol dehydrogenaseAEY53_00210C0SPA5-41051 - 4209738642.7

Displaying genes 31 – 40 of 1509 in total

Pathways

26 pathways

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003949UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-uloseC17H25N3O16P2Chemical structure of UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-uloseNot available
Average589.3384Da
Monoisotopic589.0710048Da
BASm0003971heme bC34H30FeN4O4Not available14875-96-8
Average614.484Da
Monoisotopic614.162739Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0004093di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC87H139N7O23P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1713.045Da
Monoisotopic1711.941952079Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm0004259UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uluronateC17H20N3O18P2Chemical structure of UDP-2-acetamido-2-deoxy-alpha-D-ribo-hex-3-uluronateNot available
Average616.299Da
Monoisotopic616.023355552Da
BASm0004386N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateC63H103NO12P2Chemical structure of N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1128.461Da
Monoisotopic1127.696649Da
BASm0004431pseudaminateC13H21N2O8Chemical structure of pseudaminateNot available
Average333.318Da
Monoisotopic333.1303392Da

Displaying 51–60 of 94 metabolites