Helicobacter pylori str. UM152

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM152 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain is optimally adapted to a temperature of 37.0°C, reflecting its association with host environments, specifically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori is known for its ability to thrive in acidic conditions, which is a common characteristic of its habitat within the stomach. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its niche in the gastric environment where oxygen concentrations are lower than in the atmosphere. This adaptation may confer advantages in colonization and survival within the host's stomach, as well as in evading the host's immune responses. The isolation of strain UM152 contributes to the understanding of H. pylori's genetic and phenotypic diversity. Further studies could elucidate the strain's specific metabolic pathways and interactions with the host, potentially uncovering unique adaptations that facilitate its persistence in the gastric environment. The ecological role of H. pylori in the human microbiome may offer insights into its complex relationship with host health and disease, underscoring the importance of strain-level investigations in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM152

Accession NumberLFIS00000000.1

Gene Summary

Adenine Count

493454 bp

Thymine Count

502537 bp

Guanine Count

318272 bp

Cytosine Count

319072 bp

Genome Length

1633599 bp

Protein-coding Genes

1466 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
atp f0f1 synthase subunit alphaAEY53_00060Q1CSD3+9962 - 1147355201.5
atp synthase f0f1 subunit gammaAEY53_00065B2UUP1+11488 - 1239334116.1
atp f0f1 synthase subunit betaAEY53_00070B5Z8D0+12426 - 1382651134.8
atp synthase f0f1 subunit epsilonAEY53_00075B5Z8C9+13837 - 1420813345.0
biopolymer transporter exbbAEY53_00080Q9ZK83+14219 - 1478821178.3
biopolymer transporter exbdAEY53_00085Q9ZK84+14841 - 1524215382.6
energy transducer tonbAEY53_00090Not Available+15261 - 1608532018.8
translocation protein tolbAEY53_00095O25751+16082 - 1733547884.8
peptidoglycan-binding proteinAEY53_00100P0A138+17402 - 1795320582.6
tetratricopeptide repeat proteinAEY53_00105Not Available+17961 - 1895638420.9

Displaying genes 11 – 20 of 1509 in total

Pathways

26 pathways

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm00034715-amino-6-(5-phospho-D-ribosylamino)uracilC9H13N4O9PChemical structure of 5-amino-6-(5-phospho-D-ribosylamino)uracilNot available
Average352.197Da
Monoisotopic352.0431122Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0003761dehypoxanthine futalosineC14H16O7Chemical structure of dehypoxanthine futalosineNot available
Average296.275Da
Monoisotopic296.0896029Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm0003841N-[(R)-4-phosphopantothenoyl]-L-cysteineC12H20N2O9PSChemical structure of N-[(R)-4-phosphopantothenoyl]-L-cysteineNot available
Average399.33Da
Monoisotopic399.064359144Da
BASm0003896ADP-D-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-D-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da

Displaying 41–50 of 94 metabolites