Helicobacter pylori str. 655/99

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 655/99 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, commonly found in the gastric environment of mammals, particularly humans. As a member of the Helicobacter genus, strain 655/99 exhibits the typical traits associated with this group, including a unique motility due to its helical structure, which enables it to navigate the viscous gastric mucus layer. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is characteristic of its niche within the stomach, where oxygen concentrations are lower than in the external environment. The adaptation of H. pylori to its acidic habitat is facilitated by various mechanisms, including the production of urease, which neutralizes gastric acid and creates a more hospitable microenvironment. The presence of this strain in the gastric microbiota underscores the complex interactions between host physiology and microbial life, providing insights into the evolution of gastric microbes and their potential roles in influencing host health. Understanding the ecological dynamics of H. pylori strain 655/99 may offer further perspectives on microbial adaptation to extreme environments within the human body.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. 655/99

Accession NumberJSXB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1475 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+116 - 1625Not Available
5s ribosomal rnaNot AvailableNot Available+522 - 639Not Available
23s ribosomal rnaNot AvailableNot Available+869 - 3757Not Available
nucleaseHPY655_00005Not Available-356 - 114430742.6
50s ribosomal protein l19HPY655_00010Not Available-1800 - 215613642.7
trna (guanine-n1)-methyltransferaseHPY655_00015Not Available-2178 - 286725936.4
16s rrna-processing protein rimmHPY655_00020Not Available-2868 - 341320504.1
rna-binding proteinHPY655_00025Not Available-3422 - 374511963.4
30s ribosomal protein s16HPY655_00030Not Available-3762 - 39928972.0
signal recognition particleHPY655_00035Not Available-4066 - 541249231.1

Displaying genes 1 – 10 of 1517 in total

Pathways

26 pathways

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da

Displaying 1–6 of 6 metabolites