Helicobacter pylori str. 1198/04

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 1198/04 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is primarily known for colonizing the gastric epithelium, where it is believed to play a role in various gastrointestinal disorders. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its ecological niche within the acidic environment of the stomach. This adaptation not only enables the bacterium to survive but also allows it to exploit the unique conditions present in the gastric milieu, where it can evade the host's immune responses and establish colonization. Given these traits, H. pylori strain 1198/04 exemplifies the specialized adaptations of bacteria to their host environments, highlighting the intricate relationships between microbial life and host physiology. Such adaptations may influence microbial diversity and stability within the gastrointestinal tract, potentially affecting overall host health and disease states.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. 1198/04

Accession NumberJSXT00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1485 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+50 - 167Not Available
23s ribosomal rnaNot AvailableNot Available+405 - 3294Not Available
ribonuclease nHPY1198_00005Not Available-246 - 112434668.8
biotin synthaseHPY1198_00010Not Available-1124 - 197231462.7
restriction endonucleaseHPY1198_00015Not Available+2390 - 473291865.1
restriction endonucleaseHPY1198_00020Not Available+4726 - 658871541.8
16s ribosomal rnaNot AvailableNot Available+6451 - 7960Not Available
endonucleaseHPY1198_00025Not Available+6713 - 757633621.6
hypothetical proteinHPY1198_00030Not Available-7649 - 78256426.87
prephenate dehydrogenaseHPY1198_00035Not Available-7918 - 874530494.4

Displaying genes 1 – 10 of 1526 in total

Pathways

26 pathways

Metabolites

135 records
Metabolite IDMetabolite nameStructureCAS number
BASm0010449N(6)-(D-ribulosyl)-L-lysineC11H23N2O6Chemical structure of N(6)-(D-ribulosyl)-L-lysineNot available
Average279.312Da
Monoisotopic279.1550629Da
BASm0010451N(6)-(3-O-phospho-D-ribulosyl)-L-lysineC11H22N2O9PChemical structure of N(6)-(3-O-phospho-D-ribulosyl)-L-lysineNot available
Average357.276Da
Monoisotopic357.1068409Da
BASm0010452N-(D-ribulosyl)-cadaverineC10H24N2O4Chemical structure of N-(D-ribulosyl)-cadaverineNot available
Average236.311Da
Monoisotopic236.1725101Da
BASm0010453N-(3-O-phospho-D-ribulosyl)-cadaverineC10H23N2O7PChemical structure of N-(3-O-phospho-D-ribulosyl)-cadaverineNot available
Average314.275Da
Monoisotopic314.1242881Da
BASm0010454N(6)-(D-erythrulosyl)-L-lysineC10H21N2O5Chemical structure of N(6)-(D-erythrulosyl)-L-lysineNot available
Average249.286Da
Monoisotopic249.1444982Da
BASm0010455N(6)-(3-O-phospho-D-erythrulosyl)-L-lysineC10H20N2O8PChemical structure of N(6)-(3-O-phospho-D-erythrulosyl)-L-lysineNot available
Average327.25Da
Monoisotopic327.09627619Da
BASm0010456N-(D-erythrulosyl)-cadaverineC9H22N2O3Chemical structure of N-(D-erythrulosyl)-cadaverineNot available
Average206.285Da
Monoisotopic206.161945417Da
BASm0010457N-(3-O-phospho-D-erythrulosyl)-cadaverineC9H21N2O6PChemical structure of N-(3-O-phospho-D-erythrulosyl)-cadaverineNot available
Average284.249Da
Monoisotopic284.113723402Da
BASm00106538-oxo-GMPC10H12N5O9PChemical structure of 8-oxo-GMPNot available
Average377.207Da
Monoisotopic377.038361144Da
BASm00107383-phosphoshikimateC7H8O8PChemical structure of 3-phosphoshikimateNot available
Average251.108Da
Monoisotopic250.997324955Da

Displaying 121–130 of 135 metabolites