Helicobacter pylori str. 1198/04

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 1198/04 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is primarily known for colonizing the gastric epithelium, where it is believed to play a role in various gastrointestinal disorders. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its ecological niche within the acidic environment of the stomach. This adaptation not only enables the bacterium to survive but also allows it to exploit the unique conditions present in the gastric milieu, where it can evade the host's immune responses and establish colonization. Given these traits, H. pylori strain 1198/04 exemplifies the specialized adaptations of bacteria to their host environments, highlighting the intricate relationships between microbial life and host physiology. Such adaptations may influence microbial diversity and stability within the gastrointestinal tract, potentially affecting overall host health and disease states.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. 1198/04

Accession NumberJSXT00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1485 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+50 - 167Not Available
23s ribosomal rnaNot AvailableNot Available+405 - 3294Not Available
ribonuclease nHPY1198_00005Not Available-246 - 112434668.8
biotin synthaseHPY1198_00010Not Available-1124 - 197231462.7
restriction endonucleaseHPY1198_00015Not Available+2390 - 473291865.1
restriction endonucleaseHPY1198_00020Not Available+4726 - 658871541.8
16s ribosomal rnaNot AvailableNot Available+6451 - 7960Not Available
endonucleaseHPY1198_00025Not Available+6713 - 757633621.6
hypothetical proteinHPY1198_00030Not Available-7649 - 78256426.87
prephenate dehydrogenaseHPY1198_00035Not Available-7918 - 874530494.4

Displaying genes 1 – 10 of 1526 in total

Pathways

26 pathways

Metabolites

135 records
Metabolite IDMetabolite nameStructureCAS number
BASm0007625prenyl-FMNH2C22H29N4O9PChemical structure of prenyl-FMNH2Not available
Average524.468Da
Monoisotopic524.1683127Da
BASm0007732dimethylallyl phosphateC5H9O4PChemical structure of dimethylallyl phosphateNot available
Average164.098Da
Monoisotopic164.0249429Da
BASm0008933pyridinium-3,5-dicarboxylate mononucleotideC12H11NO11PChemical structure of pyridinium-3,5-dicarboxylate mononucleotideNot available
Average376.191Da
Monoisotopic376.008617916Da
BASm0008938pyridinium-3,5-bisthiocarboxylate mononucleotideC12H11NO9PS2Chemical structure of pyridinium-3,5-bisthiocarboxylate mononucleotideNot available
Average408.31Da
Monoisotopic407.962931024Da
BASm0008939Ni(II)-pyridinium-3,5-bisthiocarboxylate mononucleotideC12H11NNiO9PS2Chemical structure of Ni(II)-pyridinium-3,5-bisthiocarboxylate mononucleotideNot available
Average467.01Da
Monoisotopic465.897176Da
BASm0009208pyridinium-3-carboxylate-5-thiocarboxylate mononucleotideC12H11NO10PSChemical structure of pyridinium-3-carboxylate-5-thiocarboxylate mononucleotideNot available
Average392.25Da
Monoisotopic391.98577447Da
BASm0009314alpha-D-galactosyl-di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-galactosyl-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.670099816Da
BASm0009321beta-D-fructose 1-phosphateC6H11O9PChemical structure of beta-D-fructose 1-phosphateNot available
Average258.12Da
Monoisotopic258.015166092Da
BASm00102688-oxo-GDPC10H12N5O12P2Chemical structure of 8-oxo-GDPNot available
Average456.178Da
Monoisotopic455.997415582Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da

Displaying 111–120 of 135 metabolites