Capnocytophaga ochracea

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Capnocytophaga

Description

Capnocytophaga ochracea is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This organism inhabits diverse environments, indicating its capacity to adapt to various ecological niches. Its microaerophilic nature suggests that it thrives in environments with low oxygen levels, which could influence its interactions with other microbial communities and its role in biogeochemical cycles. The unique morphology of C. ochracea, along with its cell arrangement, may play a role in its ecological functions, potentially affecting nutrient cycling and microbial dynamics in its habitats. The ability to form chains could facilitate nutrient exchange and communication between cells, enhancing its survival and adaptability in microaerophilic conditions. This trait might also influence its interactions with other microorganisms, including potential symbiotic relationships or competition for resources. Overall, the adaptability of Capnocytophaga ochracea to varying habitats and its specific oxygen requirements provide insights into the ecological roles of microaerophilic bacteria in diverse environments. Understanding these traits can contribute to broader discussions on microbial ecology and the maintenance of ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCapnocytophaga
SpeciesCapnocytophaga ochracea
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Capnocytophaga ochracea

Accession NumberUYIQ00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2269 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
murein peptide amidase aNCTC11458_02303Not Available+2658563 - 265961840283.0
uncharacterised proteinNCTC11458_02304Not Available+2659687 - 266003413055.9
regulatory protein asncNCTC11458_02305Not Available+2660021 - 266052719540.8
mcrbc restriction endonuclease system, mcrb subunit, putativeNCTC11458_02306Not Available+2660624 - 266300293414.0
5-methylcytosine-specific restriction enzyme subunit mcrcNCTC11458_02307Not Available+2662983 - 266429651903.0
glycine/sarcosine n-methyltransferaseNCTC11458_02308Not Available+2664317 - 266501226140.5
domain of uncharacterised function (duf1877)NCTC11458_02309Not Available+2665086 - 266557719036.4
uncharacterised proteinNCTC11458_02310Not Available+2665600 - 26658218723.8
addiction module antitoxinNCTC11458_02311Not Available+2665821 - 266611411408.7
abc transporter atp-binding proteinNCTC11458_02312Not Available+2666145 - 266776461303.8

Displaying genes 2301 – 2310 of 2334 in total

Pathways

23 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0018533CDP-DG(14:0/16:0)C42H77N3O15P2Chemical structure of CDP-DG(14:0/16:0)NULL
Average926.032Da
Monoisotopic925.482992787Da
BASm0018559CDP-DG(16:1(9Z)/18:1(9Z))C46H81N3O15P2Chemical structure of CDP-DG(16:1(9Z)/18:1(9Z))NULL
Average978.108Da
Monoisotopic977.514292916Da
BASm00188761-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0)C17H36NO7PNot availableNULL
Average397.449Da
Monoisotopic397.222939501Da
BASm00188771-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)C19H40NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)NULL
Average425.4972Da
Monoisotopic425.254239151Da
BASm00188791-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)C21H44NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)NULL
Average453.5503Da
Monoisotopic453.285539279Da
BASm00188811-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)C23H48NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)NULL
Average481.6035Da
Monoisotopic481.316839407Da
BASm00188831-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0)C18H36O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0)NULL
Average427.4468Da
Monoisotopic427.209694262Da
BASm00188841-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1)C20H38O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1)NULL
Average453.4841Da
Monoisotopic453.225344326Da
BASm00188851-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0)C22H44O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0)NULL
Average483.5531Da
Monoisotopic483.272294518Da
BASm00188861-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1)C22H42O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1)NULL
Average481.5372Da
Monoisotopic481.256644454Da

Displaying 31–40 of 88 metabolites