Xylella fastidiosa Temecula1

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Xanthomonadales

Family

Xanthomonadaceae

Genus

Xylella

Description

Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumProteobacteria
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusXylella
Speciesfastidiosa
StrainTemecula1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xylella fastidiosa Temecula1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature26
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Grapevine
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xylella fastidiosa Temecula1

Accession NumberNC_004556

Gene Summary

Adenine Count

605295 bp

Thymine Count

609845 bp

Guanine Count

659450 bp

Cytosine Count

645212 bp

Genome Length

2519802 bp

Protein-coding Genes

2217426 genes

Non-Coding Genes

302376 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Abc transporterPD_RS01900Q87EF0+450846 - 45259464187.6
tetraacyldisaccharide 4'-kinasePD_RS01905B2I804+452591 - 45361038320.3
AttlNot AvailableNot Available+453721 - 453732Not Available
Phage-related tail proteinPD_RS01910Not Available-454017 - 45471825600.5
Putative phage tail fiber proteinPD_RS01915Not Available-454741 - 45560730559.9
Phage-related tail proteinPD_RS01920Not Available-455615 - 45617220603.0
Phage-related baseplate assembly proteinPD_RS01925Not Available-456165 - 45705832150.3
Phage-related baseplate assembly proteinPD_RS01930P51768-457058 - 45739612255.0
Plasmid maintenance system killer higbPD_RS01935Not Available+457594 - 45787510639.8
Putative xre family plasmid maintenance system antidote proteinPD_RS01940P37371+457886 - 45816110073.3

Displaying genes 1 – 10 of 4546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0009262(3R)-3-hydroxypentanoateC5H9O3Chemical structure of (3R)-3-hydroxypentanoateNot available
Average117.125Da
Monoisotopic117.0557177Da
BASm0009272(3S)-3-hydroxypentanoyl-CoAC26H40N7O18P3SChemical structure of (3S)-3-hydroxypentanoyl-CoANot available
Average863.62Da
Monoisotopic863.138534Da
BASm0009273(3S)-3-hydroxypentanoateC5H9O3Chemical structure of (3S)-3-hydroxypentanoateNot available
Average117.125Da
Monoisotopic117.05571773Da
BASm0009728(Z)-2-((N-methylformamido)methylene)-5-hydroxybutanolactoneC7H9NO4Chemical structure of (Z)-2-((N-methylformamido)methylene)-5-hydroxybutanolactoneNot available
Average171.152Da
Monoisotopic171.053157774Da
BASm0009860beta-D-galacturonosyl di-trans,nona-cis-dodecaprenyl phosphateC66H105O10PChemical structure of beta-D-galacturonosyl di-trans,nona-cis-dodecaprenyl phosphateNot available
Average1089.531Da
Monoisotopic1088.745633739Da
BASm0009881di-trans,nona-cis-dodecaprenyl phosphateC60H97O4PChemical structure of di-trans,nona-cis-dodecaprenyl phosphateNot available
Average913.407Da
Monoisotopic912.713545761Da
BASm0010031UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamateC28H39N5O23P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamateNot available
Average875.582Da
Monoisotopic875.1533009Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da
BASm00103213',3'-cUAMPC19H21N7O14P2Chemical structure of 3',3'-cUAMPNot available
Average633.361Da
Monoisotopic633.06326954Da
BASm00103223',3',3'-cAAGC30H33N15O19P3Chemical structure of 3',3',3'-cAAGNot available
Average1000.603Da
Monoisotopic1000.130645636Da

Displaying 121–130 of 139 metabolites